Cluster based on spatially correlated features
clusterSpatialCorFeats(
spatCorObject,
name = "spat_clus",
hclust_method = "ward.D",
k = 10,
return_obj = TRUE
)spatial correlation object
name for spatial clustering results
method for hierarchical clustering
number of clusters to extract
return spatial correlation object (spatCorObject)
spatCorObject or cluster results
g <- GiottoData::loadGiottoMini("visium")
#> 1. read Giotto object
#> 2. read Giotto feature information
#> 3. read Giotto spatial information
#> 3.1 read Giotto spatial shape information
#> cell_spatInfo_spatVector.shp
#> cell
#>
#> 3.2 read Giotto spatial centroid information
#> cell
#>
#> 3.3 read Giotto spatial overlap information
#> No overlaps were found, overlap loading will be
#> skipped
#>
#> 4. read Giotto image information
#> a giotto python environment was found
#> Using python path:
#> "/Users/yuanlab/Library/r-miniconda/envs/giotto_env/bin/pythonw"
clusterSpatialCorFeats(spatCorObject = detectSpatialCorFeats(
g, method = "network"))
#> $cor_DT
#> feat_ID variable spat_cor expr_cor cordiff spatrank
#> <char> <fctr> <num> <num> <num> <int>
#> 1: 1110017D15Rik 1110017D15Rik 1.0000000 1.0000000 0.00000000 1
#> 2: 1110017D15Rik Dnali1 0.5152451 0.3690438 0.14620131 2
#> 3: 1110017D15Rik Spag8 0.5044653 0.3180572 0.18640810 3
#> 4: 1110017D15Rik 1700001C02Rik 0.4957575 0.4021766 0.09358091 4
#> 5: 1110017D15Rik Ccdc153 0.4947645 0.4050736 0.08969090 5
#> ---
#> 401952: Zmat4 Cabp7 -0.3106553 -0.2099353 -0.10072002 630
#> 401953: Zmat4 Sst -0.3310337 -0.1903481 -0.14068568 631
#> 401954: Zmat4 Hopx -0.3886083 -0.2587739 -0.12983435 632
#> 401955: Zmat4 Ttr -0.4280274 -0.3482754 -0.07975206 633
#> 401956: Zmat4 Gfap -0.4757224 -0.3562773 -0.11944508 634
#> exprrank rankdiff
#> <int> <int>
#> 1: 1 0
#> 2: 6 -4
#> 3: 10 -7
#> 4: 3 1
#> 5: 2 3
#> ---
#> 401952: 630 0
#> 401953: 627 4
#> 401954: 632 0
#> 401955: 633 0
#> 401956: 634 0
#>
#> $feat_order
#> [1] "Gna12" "Ccnd2" "Btbd17" "Sox9"
#> [5] "Sez6" "Serpinf1" "S100a6" "Col1a1"
#> [9] "Vwf" "Esam" "Npas1" "Tiam1"
#> [13] "Bcam" "Hmgn2" "Rab3b" "Inmt"
#> [17] "Ddr1" "Homer3" "Cp" "Calb2"
#> [21] "Man1a" "Efnb3" "Hlf" "Gstm7"
#> [25] "Cavin1" "Sst" "Hapln2" "Hspb1"
#> [29] "Ndrg1" "Nid1" "Kit" "Pvalb"
#> [33] "Tmbim1" "Crip1" "Tek" "Elovl1"
#> [37] "Cyba" "Itih3" "Cnp" "Hap1"
#> [41] "Clic1" "Stx1a" "Arpp19" "Dio2"
#> [45] "Id3" "Crlf1" "Ttc9b" "Carhsp1"
#> [49] "Cabp7" "Fam163b" "Rarres2" "Syn2"
#> [53] "Ick" "Prox1" "Adssl1" "Vipr2"
#> [57] "Gltp" "Amotl1" "Bcas1" "Aldh1a2"
#> [61] "Tppp3" "Sirt2" "Lpl" "Cers2"
#> [65] "Qdpr" "Stk32c" "Lbp" "Hsd11b1"
#> [69] "Vtn" "Stac2" "Plxdc1" "Igfbp4"
#> [73] "Dbndd2" "Pltp" "Slc12a4" "Cadps2"
#> [77] "Erbb3" "Pmp22" "Kcnab3" "Myh11"
#> [81] "Plod1" "Etnppl" "Arhgef25" "Rcn3"
#> [85] "Vip" "Utrn" "Grm1" "Reep3"
#> [89] "Fabp7" "Dcn" "Slc17a8" "Dusp6"
#> [93] "Kitl" "Ccn2" "Timp3" "Ascl1"
#> [97] "Unc5b" "Vsir" "Gamt" "Ptprb"
#> [101] "Csrp2" "Adarb1" "Rnf130" "Nefh"
#> [105] "Aebp1" "Sept4" "Gria1" "Sypl"
#> [109] "Arsg" "Cacng4" "Rab37" "Itgb4"
#> [113] "Aspa" "Cygb" "Rflnb" "Doc2b"
#> [117] "Gfap" "Npas3" "Serpina3n" "Clmn"
#> [121] "Prkch" "Fbln5" "Akr1c18" "Gng4"
#> [125] "Sema4d" "Cxcl14" "Hexb" "Iqgap2"
#> [129] "Crhbp" "Rab3c" "Thbs4" "Serinc5"
#> [133] "Erbin" "Prkcd" "Pdlim2" "Ednrb"
#> [137] "Cpne6" "Sema5a" "Matn2" "Nptxr"
#> [141] "Enpp2" "Efcab6" "Ppp1r1a" "Litaf"
#> [145] "Il1rap" "Apod" "Cpox" "Grik1"
#> [149] "Clic6" "Nr4a1" "Igfbp6" "Sncg"
#> [153] "Gzma" "Grm2" "Prph" "Rsph1"
#> [157] "Sox8" "Fam234a" "Lims2" "Aqp4"
#> [161] "Slc12a2" "Cd74" "Pdgfrb" "Csf1r"
#> [165] "Cbln2" "Frmd8" "Gldc" "Tcf7l2"
#> [169] "Bhlhe22" "Kcnip2" "Alas2" "Gdf11"
#> [173] "Baiap2" "Ifitm3" "Phkg1" "Nptx1"
#> [177] "Pde8a" "Itih5" "Homer2" "Fam20c"
#> [181] "Cplx2" "Myo5b" "Snca" "Col3a1"
#> [185] "Ecrg4" "Map4k4" "2010300C02Rik" "Ogfrl1"
#> [189] "Fn1" "Efhd1" "Ngef" "Bok"
#> [193] "Tmem163" "Lct" "Cfh" "Ptpn4"
#> [197] "Tnni1" "Csrp1" "Nfasc" "Syt2"
#> [201] "Atp2b4" "Rgs16" "Ncf2" "Cnih3"
#> [205] "Tmem63a" "Cfap126" "Meig1" "Ccdc3"
#> [209] "Rgs5" "Enkur" "Myoc" "Vim"
#> [213] "Prkcq" "Gad2" "Lcn2" "Nr4a2"
#> [217] "Ermn" "Fibcd1" "Gsn" "Grb14"
#> [221] "Notch1" "Ube2l6" "Gatm" "Cd82"
#> [225] "Mdk" "Lamp5" "Itpka" "Chgb"
#> [229] "Mal" "Pdyn" "Nkx2-2" "Edn3"
#> [233] "Car2" "Col9a3" "Chrna4" "Gss"
#> [237] "Slc7a11" "Tm4sf1" "Kcnab1" "Shox2"
#> [241] "Serpini1" "Tspan2" "S100a11" "Vcam1"
#> [245] "Lef1" "Npy2r" "F3" "Calb1"
#> [249] "Epha7" "Slc44a1" "1110017D15Rik" "Tpm2"
#> [253] "Slc6a9" "Laptm5" "Sema3c" "Hpca"
#> [257] "Padi2" "Slc4a2" "Gabrd" "Rgs12"
#> [261] "Slc30a3" "Emilin1" "1700001C02Rik" "Gabra4"
#> [265] "Pdgfra" "Epha5" "Tesc" "Pitpnm2"
#> [269] "Mmp17" "Cit" "Foxp2" "Arpc1b"
#> [273] "Col1a2" "Eln" "Pcolce" "Tsc22d4"
#> [277] "Cald1" "Ccdc136" "Npy" "Slc13a4"
#> [281] "Gkn3" "Slc6a13" "Mgp" "Lmo3"
#> [285] "Slco1c1" "Cpne9" "Itpr2" "Slc6a11"
#> [289] "Vamp1" "Cd9" "Pglyrp1" "Slc17a6"
#> [293] "Sipa1l3" "Sh3gl3" "Plekhb1" "Nupr1"
#> [297] "Dkk3" "Cox6a2" "Dkkl1" "Fgfr2"
#> [301] "Crym" "Slc38a5" "Flna" "Bgn"
#> [305] "Col4a1" "Plat" "Nr3c2" "Cbln1"
#> [309] "Gab1" "Pllp" "Necab2" "Dbndd1"
#> [313] "Agt" "Cryab" "Tagln" "Mcam"
#> [317] "Olfm2" "Icam5" "Anxa2" "Rora"
#> [321] "Calml4" "Htr3a" "Paqr5" "Rasgrf1"
#> [325] "Zic1" "Mobp" "Hhatl" "Trf"
#> [329] "Cpne4" "Cdhr4" "Cd59a" "Gng11"
#> [333] "Chrm1" "Prr5l" "Ugt8a" "Rims3"
#> [337] "Sgpp2" "Camkv" "Sox10" "Micall1"
#> [341] "Tie1" "Fa2h" "Ucp2" "Vav3"
#> [345] "Ccp110" "Gria2" "Rasl10a" "Foxj1"
#> [349] "Trim59" "Dynlrb2" "Gjc1" "Neurod1"
#> [353] "Ttyh2" "Cpne7" "Nrip3" "Tbr1"
#> [357] "Lcat" "Tmem98" "Myo1d" "Prdm8"
#> [361] "Tgfbi" "Kcnc2" "Thrsp" "Isg15"
#> [365] "Acta2" "H2-Q4" "Dock4" "Myrf"
#> [369] "Lmo1" "Igfbp7" "P2ry12" "Pcdh8"
#> [373] "Lgi4" "Fxyd1" "Fxyd7" "Mag"
#> [377] "Zcchc12" "Anln" "Wnt4" "C1ql2"
#> [381] "Unc93b1" "Tspan15" "Ppp1r14a" "Clic4"
#> [385] "Galnt6" "Ccn3" "Rims2" "Zmat4"
#> [389] "Cldn11" "Ccdc33" "Slc32a1" "Tgm2"
#> [393] "Vstm2l" "Neurod6" "Crygn" "Enpp6"
#> [397] "Neurod2" "Satb2" "Pcp4l1" "Txnip"
#> [401] "Egr1" "Otud7b" "Car14" "Rgs4"
#> [405] "Dock10" "Lpar1" "Trps1" "Ptpn3"
#> [409] "Lefty1" "Zfhx3" "St6galnac5" "Ak5"
#> [413] "Hrh3" "Nexn" "Adgrl4" "Rlbp1"
#> [417] "Igfbp2" "Wfs1" "Cplx3" "Orai2"
#> [421] "Olig2" "Gpr37" "Plcb4" "Nxph4"
#> [425] "Ndufa4l2" "Cacng5" "Plekhg1" "Cmtm5"
#> [429] "Gpr161" "Rfx3" "Igsf21" "Ramp3"
#> [433] "Arhgap12" "Nkx6-2" "Ninj2" "Cldn5"
#> [437] "Htr2c" "Hspb8" "Fmod" "Prelp"
#> [441] "Mpped1" "Rapgef5" "Vwa1" "Stab1"
#> [445] "Arl15" "Reln" "Mustn1" "Pbxip1"
#> [449] "Dnali1" "Id1" "Lrrtm3" "Tmem212"
#> [453] "Epop" "Gjc2" "1190005I06Rik" "Ctla2a"
#> [457] "Cnr1" "Gpr4" "Sowaha" "Tent5c"
#> [461] "Serpinb1a" "S1pr5" "Penk" "Cdc42ep2"
#> [465] "Slitrk6" "Hpcal4" "Olig1" "Rprml"
#> [469] "Stxbp6" "Hs3st2" "Rbp1" "Ppm1e"
#> [473] "Sox18" "Kctd4" "Nxph3" "Vat1l"
#> [477] "Cd24a" "Odf3b" "Gjb1" "Selplg"
#> [481] "Bcl11b" "Lhfp" "Ranbp3l" "Msx1"
#> [485] "Zdhhc22" "Phldb1" "Ctxn1" "Tprn"
#> [489] "Vstm2a" "Ndnf" "Pdp1" "Scn3b"
#> [493] "Cdc42ep1" "Gal3st1" "Rasd1" "Spink8"
#> [497] "Opalin" "Gja4" "Synpo2" "Pcdh20"
#> [501] "Adra1b" "Fam131a" "Tmem125" "Mb21d2"
#> [505] "Lingo3" "Ncald" "Siglech" "Rgs14"
#> [509] "Gm14964" "Gpr17" "Cx3cr1" "Ezr"
#> [513] "Adarb2" "Cpne8" "Plekhg3" "Lamb2"
#> [517] "Creb5" "Cntn2" "Aldh1a1" "Phgdh"
#> [521] "Tnfaip6" "Camk2d" "Shisa6" "Cthrc1"
#> [525] "Tmem119" "Hmgb2" "Tmem158" "Dsp"
#> [529] "Lrtm2" "Gabra5" "Tns1" "Nell1"
#> [533] "Slain1" "Prr18" "S100a8" "S100a9"
#> [537] "Col8a2" "Synpr" "Sertm1" "Adgrf5"
#> [541] "Capg" "Gjc3" "Fcer1g" "Pde1a"
#> [545] "Tafa1" "Ddn" "Hopx" "Ptk2b"
#> [549] "Rgs3" "Kcng2" "Ntng1" "H2-Q7"
#> [553] "Ifitm2" "Plaat3" "Plekhh1" "Myl4"
#> [557] "H2-K1" "Dpp6" "Tmem91" "Cyp2d22"
#> [561] "Ttr" "Suclg2" "Patj" "Btbd3"
#> [565] "Unc13c" "Syt9" "Shisal1" "Grm4"
#> [569] "Sox11" "Slc22a8" "Slc24a3" "Klk8"
#> [573] "Ipcef1" "Tnnt1" "Hhip" "Spag8"
#> [577] "Fxyd6" "Ppp1r3c" "Cbln4" "Nnat"
#> [581] "Myl9" "Vxn" "Lgals1" "Gpr88"
#> [585] "Ctxn3" "Lyz2" "Tmem100" "Wfdc17"
#> [589] "Ahnak" "Hba-a2" "Hba-a1" "Ccdc153"
#> [593] "Ccnd1" "Serpinh1" "Gad1" "Arhgef10"
#> [597] "2410004P03Rik" "Nt5dc2" "Cebpd" "Sod3"
#> [601] "H2-D1" "C4b" "Tmem88b" "Hbb-bt"
#> [605] "Rhog" "Rprm" "Ly6a" "Mog"
#> [609] "Trbc2" "Igkc" "Smim1" "Hs3st4"
#> [613] "Evi2a" "Prkcg" "Ly6c1" "Gbp4"
#> [617] "Wipf3" "BC039966" "Gm13889" "Plcxd2"
#> [621] "Mia" "Pou3f1" "Lrrc10b" "Apol11b"
#> [625] "Gpr62" "Shisa8" "Gm2115" "Kctd12"
#> [629] "1700047M11Rik" "Lhfpl3" "C030029H02Rik" "Gm19935"
#> [633] "9630013A20Rik" "2900040C04Rik"
#>
#> $cor_hclust
#> $cor_hclust$spat_clus
#>
#> Call:
#> stats::hclust(d = cor_dist, method = hclust_method)
#>
#> Cluster method : ward.D
#> Number of objects: 634
#>
#>
#>
#> $cor_clusters
#> $cor_clusters$spat_clus
#> Gna12 Ccnd2 Btbd17 Sox9 Sez6
#> 1 2 3 4 5
#> Serpinf1 S100a6 Col1a1 Vwf Esam
#> 6 4 6 6 6
#> Npas1 Tiam1 Bcam Hmgn2 Rab3b
#> 7 3 6 1 5
#> Inmt Ddr1 Homer3 Cp Calb2
#> 6 1 4 6 3
#> Man1a Efnb3 Hlf Gstm7 Cavin1
#> 8 1 9 1 6
#> Sst Hapln2 Hspb1 Ndrg1 Nid1
#> 5 1 3 1 6
#> Kit Pvalb Tmbim1 Crip1 Tek
#> 8 5 1 6 6
#> Elovl1 Cyba Itih3 Cnp Hap1
#> 1 6 3 1 10
#> Clic1 Stx1a Arpp19 Dio2 Id3
#> 6 5 5 7 6
#> Crlf1 Ttc9b Carhsp1 Cabp7 Fam163b
#> 10 5 1 8 10
#> Rarres2 Syn2 Ick Prox1 Adssl1
#> 6 2 1 10 1
#> Vipr2 Gltp Amotl1 Bcas1 Aldh1a2
#> 9 1 9 1 6
#> Tppp3 Sirt2 Lpl Cers2 Qdpr
#> 1 1 8 1 1
#> Stk32c Lbp Hsd11b1 Vtn Stac2
#> 5 4 2 6 2
#> Plxdc1 Igfbp4 Dbndd2 Pltp Slc12a4
#> 9 5 1 6 6
#> Cadps2 Erbb3 Pmp22 Kcnab3 Myh11
#> 5 1 3 5 6
#> Plod1 Etnppl Arhgef25 Rcn3 Vip
#> 1 9 2 6 5
#> Utrn Grm1 Reep3 Fabp7 Dcn
#> 6 9 1 6 6
#> Slc17a8 Dusp6 Kitl Ccn2 Timp3
#> 4 8 9 5 3
#> Ascl1 Unc5b Vsir Gamt Ptprb
#> 1 1 7 1 6
#> Csrp2 Adarb1 Rnf130 Nefh Aebp1
#> 4 9 1 9 6
#> Sept4 Gria1 Sypl Arsg Cacng4
#> 1 8 1 1 3
#> Rab37 Itgb4 Aspa Cygb Rflnb
#> 9 1 1 10 3
#> Doc2b Gfap Npas3 Serpina3n Clmn
#> 8 6 7 8 3
#> Prkch Fbln5 Akr1c18 Gng4 Sema4d
#> 9 6 5 5 1
#> Cxcl14 Hexb Iqgap2 Crhbp Rab3c
#> 7 7 8 5 9
#> Thbs4 Serinc5 Erbin Prkcd Pdlim2
#> 1 1 1 9 1
#> Ednrb Cpne6 Sema5a Matn2 Nptxr
#> 6 2 10 8 2
#> Enpp2 Efcab6 Ppp1r1a Litaf Il1rap
#> 1 8 2 1 1
#> Apod Cpox Grik1 Clic6 Nr4a1
#> 1 1 7 4 8
#> Igfbp6 Sncg Gzma Grm2 Prph
#> 5 7 7 3 3
#> Rsph1 Sox8 Fam234a Lims2 Aqp4
#> 4 1 1 1 6
#> Slc12a2 Cd74 Pdgfrb Csf1r Cbln2
#> 1 7 6 7 5
#> Frmd8 Gldc Tcf7l2 Bhlhe22 Kcnip2
#> 1 7 9 10 2
#> Alas2 Gdf11 Baiap2 Ifitm3 Phkg1
#> 6 3 2 6 7
#> Nptx1 Pde8a Itih5 Homer2 Fam20c
#> 2 1 6 8 9
#> Cplx2 Myo5b Snca Col3a1 Ecrg4
#> 2 8 2 6 4
#> Map4k4 2010300C02Rik Ogfrl1 Fn1 Efhd1
#> 1 2 9 6 1
#> Ngef Bok Tmem163 Lct Cfh
#> 5 9 1 10 6
#> Ptpn4 Tnni1 Csrp1 Nfasc Syt2
#> 9 1 1 1 5
#> Atp2b4 Rgs16 Ncf2 Cnih3 Tmem63a
#> 5 9 6 5 1
#> Cfap126 Meig1 Ccdc3 Rgs5 Enkur
#> 4 4 6 6 4
#> Myoc Vim Prkcq Gad2 Lcn2
#> 6 6 1 5 6
#> Nr4a2 Ermn Fibcd1 Gsn Grb14
#> 5 1 8 1 1
#> Notch1 Ube2l6 Gatm Cd82 Mdk
#> 6 6 1 1 6
#> Lamp5 Itpka Chgb Mal Pdyn
#> 5 2 2 1 10
#> Nkx2-2 Edn3 Car2 Col9a3 Chrna4
#> 1 6 1 6 9
#> Gss Slc7a11 Tm4sf1 Kcnab1 Shox2
#> 3 6 6 8 9
#> Serpini1 Tspan2 S100a11 Vcam1 Lef1
#> 5 1 6 6 9
#> Npy2r F3 Calb1 Epha7 Slc44a1
#> 8 7 3 10 1
#> 1110017D15Rik Tpm2 Slc6a9 Laptm5 Sema3c
#> 4 6 1 7 4
#> Hpca Padi2 Slc4a2 Gabrd Rgs12
#> 2 1 1 9 5
#> Slc30a3 Emilin1 1700001C02Rik Gabra4 Pdgfra
#> 10 6 4 9 7
#> Epha5 Tesc Pitpnm2 Mmp17 Cit
#> 2 2 10 2 9
#> Foxp2 Arpc1b Col1a2 Eln Pcolce
#> 9 1 6 6 6
#> Tsc22d4 Cald1 Ccdc136 Npy Slc13a4
#> 1 6 9 5 6
#> Gkn3 Slc6a13 Mgp Lmo3 Slco1c1
#> 6 6 6 2 7
#> Cpne9 Itpr2 Slc6a11 Vamp1 Cd9
#> 9 6 9 9 1
#> Pglyrp1 Slc17a6 Sipa1l3 Sh3gl3 Plekhb1
#> 6 9 8 1 1
#> Nupr1 Dkk3 Cox6a2 Dkkl1 Fgfr2
#> 6 5 9 5 1
#> Crym Slc38a5 Flna Bgn Col4a1
#> 2 6 6 6 6
#> Plat Nr3c2 Cbln1 Gab1 Pllp
#> 6 8 3 1 1
#> Necab2 Dbndd1 Agt Cryab Tagln
#> 9 9 9 1 6
#> Mcam Olfm2 Icam5 Anxa2 Rora
#> 1 5 2 4 9
#> Calml4 Htr3a Paqr5 Rasgrf1 Zic1
#> 4 7 6 8 9
#> Mobp Hhatl Trf Cpne4 Cdhr4
#> 1 6 1 4 4
#> Cd59a Gng11 Chrm1 Prr5l Ugt8a
#> 3 1 2 1 1
#> Rims3 Sgpp2 Camkv Sox10 Micall1
#> 9 9 2 1 1
#> Tie1 Fa2h Ucp2 Vav3 Ccp110
#> 6 1 6 9 1
#> Gria2 Rasl10a Foxj1 Trim59 Dynlrb2
#> 2 10 1 1 4
#> Gjc1 Neurod1 Ttyh2 Cpne7 Nrip3
#> 3 10 1 8 9
#> Tbr1 Lcat Tmem98 Myo1d Prdm8
#> 5 6 1 1 10
#> Tgfbi Kcnc2 Thrsp Isg15 Acta2
#> 6 9 7 6 6
#> H2-Q4 Dock4 Myrf Lmo1 Igfbp7
#> 6 2 1 8 6
#> P2ry12 Pcdh8 Lgi4 Fxyd1 Fxyd7
#> 7 10 6 6 5
#> Mag Zcchc12 Anln Wnt4 C1ql2
#> 1 3 1 9 10
#> Unc93b1 Tspan15 Ppp1r14a Clic4 Galnt6
#> 7 1 1 1 1
#> Ccn3 Rims2 Zmat4 Cldn11 Ccdc33
#> 5 9 9 1 4
#> Slc32a1 Tgm2 Vstm2l Neurod6 Crygn
#> 5 6 2 2 4
#> Enpp6 Neurod2 Satb2 Pcp4l1 Txnip
#> 1 2 5 9 6
#> Egr1 Otud7b Car14 Rgs4 Dock10
#> 5 1 1 9 1
#> Lpar1 Trps1 Ptpn3 Lefty1 Zfhx3
#> 1 7 9 8 9
#> St6galnac5 Ak5 Hrh3 Nexn Adgrl4
#> 2 10 9 9 3
#> Rlbp1 Igfbp2 Wfs1 Cplx3 Orai2
#> 7 6 8 5 10
#> Olig2 Gpr37 Plcb4 Nxph4 Ndufa4l2
#> 1 1 9 5 6
#> Cacng5 Plekhg1 Cmtm5 Gpr161 Rfx3
#> 9 9 1 8 10
#> Igsf21 Ramp3 Arhgap12 Nkx6-2 Ninj2
#> 5 9 8 1 1
#> Cldn5 Htr2c Hspb8 Fmod Prelp
#> 6 3 6 6 4
#> Mpped1 Rapgef5 Vwa1 Stab1 Arl15
#> 5 10 6 6 8
#> Reln Mustn1 Pbxip1 Dnali1 Id1
#> 6 6 4 4 6
#> Lrrtm3 Tmem212 Epop Gjc2 1190005I06Rik
#> 5 4 5 1 1
#> Ctla2a Cnr1 Gpr4 Sowaha Tent5c
#> 6 5 3 2 6
#> Serpinb1a S1pr5 Penk Cdc42ep2 Slitrk6
#> 1 1 8 1 9
#> Hpcal4 Olig1 Rprml Stxbp6 Hs3st2
#> 2 1 2 10 5
#> Rbp1 Ppm1e Sox18 Kctd4 Nxph3
#> 6 2 6 10 5
#> Vat1l Cd24a Odf3b Gjb1 Selplg
#> 5 4 4 1 7
#> Bcl11b Lhfp Ranbp3l Msx1 Zdhhc22
#> 8 9 6 6 9
#> Phldb1 Ctxn1 Tprn Vstm2a Ndnf
#> 1 2 1 2 6
#> Pdp1 Scn3b Cdc42ep1 Gal3st1 Rasd1
#> 9 8 1 1 8
#> Spink8 Opalin Gja4 Synpo2 Pcdh20
#> 8 1 6 9 10
#> Adra1b Fam131a Tmem125 Mb21d2 Lingo3
#> 9 2 1 9 8
#> Ncald Siglech Rgs14 Gm14964 Gpr17
#> 5 7 8 1 1
#> Cx3cr1 Ezr Adarb2 Cpne8 Plekhg3
#> 7 7 9 8 1
#> Lamb2 Creb5 Cntn2 Aldh1a1 Phgdh
#> 6 1 1 6 1
#> Tnfaip6 Camk2d Shisa6 Cthrc1 Tmem119
#> 1 9 8 9 7
#> Hmgb2 Tmem158 Dsp Lrtm2 Gabra5
#> 1 5 10 9 8
#> Tns1 Nell1 Slain1 Prr18 S100a8
#> 6 9 1 1 7
#> S100a9 Col8a2 Synpr Sertm1 Adgrf5
#> 7 4 10 8 6
#> Capg Gjc3 Fcer1g Pde1a Tafa1
#> 6 1 7 5 2
#> Ddn Hopx Ptk2b Rgs3 Kcng2
#> 2 2 2 9 10
#> Ntng1 H2-Q7 Ifitm2 Plaat3 Plekhh1
#> 9 6 6 1 1
#> Myl4 H2-K1 Dpp6 Tmem91 Cyp2d22
#> 5 6 8 5 6
#> Ttr Suclg2 Patj Btbd3 Unc13c
#> 4 6 9 3 9
#> Syt9 Shisal1 Grm4 Sox11 Slc22a8
#> 9 9 9 10 6
#> Slc24a3 Klk8 Ipcef1 Tnnt1 Hhip
#> 8 8 5 9 1
#> Spag8 Fxyd6 Ppp1r3c Cbln4 Nnat
#> 4 5 1 3 4
#> Myl9 Vxn Lgals1 Gpr88 Ctxn3
#> 6 5 6 5 3
#> Lyz2 Tmem100 Wfdc17 Ahnak Hba-a2
#> 7 7 7 6 6
#> Hba-a1 Ccdc153 Ccnd1 Serpinh1 Gad1
#> 6 4 8 6 5
#> Arhgef10 2410004P03Rik Nt5dc2 Cebpd Sod3
#> 1 4 10 10 6
#> H2-D1 C4b Tmem88b Hbb-bt Rhog
#> 6 6 1 6 1
#> Rprm Ly6a Mog Trbc2 Igkc
#> 5 6 1 5 1
#> Smim1 Hs3st4 Evi2a Prkcg Ly6c1
#> 4 2 1 8 6
#> Gbp4 Wipf3 BC039966 Gm13889 Plcxd2
#> 5 8 5 10 5
#> Mia Pou3f1 Lrrc10b Apol11b Gpr62
#> 4 8 8 6 1
#> Shisa8 Gm2115 Kctd12 1700047M11Rik Lhfpl3
#> 1 8 8 1 3
#> C030029H02Rik Gm19935 9630013A20Rik 2900040C04Rik
#> 1 4 1 4
#>
#>
#> $cor_coexpr_groups
#> $cor_coexpr_groups$spat_clus
#> [1] NA
#>
#>
#> attr(,"class")
#> [1] "spatCorObject" "list"