show patterns for 2D spatial data

showPattern(gobject, spatPatObj, ...)

Arguments

gobject

giotto object

spatPatObj

Output from detectSpatialPatterns

...

Arguments passed on to showPattern2D

dimension

dimension to plot

trim

Trim ends of the PC values.

background_color

background color for plot

grid_border_color

color for grid

show_legend

show legend of ggplot

point_size

size of points

show_plot

show plot

return_plot

return ggplot object

save_plot

directly save the plot [boolean]

save_param

list of saving parameters, see showSaveParameters

default_save_name

default save name for saving, don't change, change save_name in save_param

Value

ggplot

See also