These objects are imported from other packages. Follow the links below to see their documentation.
activeFeatType, activeFeatType<-, activeSpatUnit, activeSpatUnit<-, addCellMetadata, addFeatMetadata, addGiottoImage, addGiottoImageMG, addGiottoLargeImage, addGiottoPoints, addGiottoPoints3D, addGiottoPolygons, addNetworkLayout, addSpatialCentroidLocations, addSpatialCentroidLocationsLayer, aggregateStacks, aggregateStacksExpression, aggregateStacksLocations, aggregateStacksPolygonOverlaps, aggregateStacksPolygons, anndataToGiotto, annotateGiotto, annotateSpatialGrid, annotateSpatialNetwork, as.points, as.polygons, as.sf, as.sp, as.stars, as.terra, calculateMetaTable, calculateMetaTableCells, calculateOverlap, calculateOverlapParallel, calculateOverlapPolygonImages, calculateOverlapRaster, calculateOverlapSerial, calculateSpatCellMetadataProportions, centroids, changeGiottoInstructions, changeImageBg, checkGiottoEnvironment, circleVertices, combineCellData, combineFeatureData, combineFeatureOverlapData, combineMetadata, combineSpatialCellMetadataInfo, combineToMultiPolygon, convertGiottoLargeImageToMG, copy, createBentoAdata, createCellMetaObj, createDimObj, createExprObj, createFeatMetaObj, createGiottoImage, createGiottoInstructions, createGiottoLargeImage, createGiottoLargeImageList, createGiottoObject, createGiottoObjectSubcellular, createGiottoPoints, createGiottoPolygon, createGiottoPolygonsFromDfr, createGiottoPolygonsFromGeoJSON, createGiottoPolygonsFromMask, createMetafeats, createNearestNetObj, createNearestNetwork, createSpatEnrObj, createSpatialDefaultGrid, createSpatialDelaunayNetwork, createSpatialFeaturesKNNnetwork, createSpatialGrid, createSpatialKNNnetwork, createSpatialNetwork, createSpatialWeightMatrix, createSpatLocsObj, createSpatNetObj, crop, cropGiottoLargeImage, density, distGiottoImage, estimateImageBg, ext, ext<-, fDataDT, featIDs, featType, featType<-, featureNetwork, flip, gefToGiotto, getCellMetadata, getDimReduction, getExpression, getFeatureInfo, getFeatureMetadata, getGiottoImage, getMultiomics, getNearestNetwork, getPolygonInfo, getSpatialEnrichment, getSpatialEnrichment, getSpatialGrid, getSpatialGrid, getSpatialLocations, getSpatialLocations, getSpatialNetwork, getSpatialNetwork, giotto, giottoImage, giottoLargeImage, giottoMasterToSuite, giottoPoints, giottoPolygon, giottoToAnnData, giottoToSeurat, giottoToSeuratV4, giottoToSeuratV5, giottoToSpatialExperiment, hexVertices, hist, installGiottoEnvironment, instructions, instructions<-, joinGiottoObjects, loadGiotto, makePseudoVisium, objHistory, objName, objName<-, orthoGrid, overlapImagesToMatrix, overlaps, overlapToMatrix, overlapToMatrixMultiPoly, pDataDT, plotGiottoImage, polyStamp, prov, prov<-, readCellMetadata, readDimReducData, readExprData, readExprMatrix, readFeatData, readFeatMetadata, readGiottoInstructions, readNearestNetData, readPolygonData, readSpatEnrichData, readSpatLocsData, readSpatNetData, reconnectGiottoImage, rectVertices, removeCellAnnotation, removeFeatAnnotation, removeGiottoEnvironment, replaceGiottoInstructions, rescale, rescalePolygons, saveGiotto, setCellMetadata, setDimReduction, setExpression, setFeatureInfo, setFeatureMetadata, setGiotto, setGiottoImage, setMultiomics, setNearestNetwork, setPolygonInfo, setSpatialEnrichment, setSpatialGrid, setSpatialLocations, setSpatialNetwork, seuratToGiotto, seuratToGiottoV4, seuratToGiottoV5, showGiottoCellMetadata, showGiottoDimRed, showGiottoExpression, showGiottoFeatInfo, showGiottoFeatMetadata, showGiottoImageNames, showGiottoInstructions, showGiottoNearestNetworks, showGiottoSpatEnrichments, showGiottoSpatGrids, showGiottoSpatialInfo, showGiottoSpatLocs, showGiottoSpatNetworks, showProcessingSteps, smoothGiottoPolygons, spatialExperimentToGiotto, spatIDs, spatQueryGiottoPolygons, spatShift, spatUnit, spatUnit<-, spin, stitchFieldCoordinates, stitchFieldCoordinates, stitchGiottoLargeImage, subsetGiotto, subsetGiottoLocs, subsetGiottoLocsMulti, subsetGiottoLocsSubcellular, tessellate, triGrid, updateGiottoImage, updateGiottoImageMG, updateGiottoLargeImage, updateGiottoObject, updateGiottoPointsObject, updateGiottoPolygonObject, vect, wrap, writeGiottoLargeImage
addGiottoImageToSpatPlot, dimCellPlot, dimCellPlot2D, dimFeatPlot2D, dimFeatPlot3D, dimGenePlot3D, dimPlot, dimPlot2D, dimPlot3D, dotPlot, getColors, giottoSankeyPlan, plotHeatmap, plotMetaDataCellsHeatmap, plotMetaDataHeatmap, plotPCA, plotPCA_2D, plotPCA_3D, plotStatDelaunayNetwork, plotTSNE, plotTSNE_2D, plotTSNE_3D, plotUMAP, plotUMAP_2D, plotUMAP_3D, sankeyLabel, sankeyLabel<-, sankeyPlot, sankeyRelate, sankeyRelate<-, sankeySet, sankeySetAddresses, showClusterDendrogram, showClusterHeatmap, showColorInstructions, showSaveParameters, spatCellPlot, spatCellPlot2D, spatDeconvPlot, spatDimCellPlot, spatDimCellPlot2D, spatDimFeatPlot2D, spatDimFeatPlot3D, spatDimGenePlot3D, spatDimPlot, spatDimPlot2D, spatDimPlot3D, spatFeatPlot2D, spatFeatPlot2D_single, spatFeatPlot3D, spatGenePlot3D, spatInSituPlotDensity, spatInSituPlotHex, spatInSituPlotPoints, spatNetwDistributions, spatNetwDistributionsDistance, spatNetwDistributionsKneighbors, spatPlot, spatPlot2D, spatPlot3D, subsetSankeySet, violinPlot
pipe operator
vector of colors
vector of colors